Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG16952 FBgn0030701

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Gene Synonyms

Location

Primary_assembly X: 15,870,183-15,875,607 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 6 transcripts (splice variants) and 172 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG16952-RH	FBtr0474173	3852	1043aa	FBpp0423172	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K4K0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG16952-RC	FBtr0074116	4040	1026aa	FBpp0073926	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VXM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16952-RD	FBtr0300801	4019	1026aa	FBpp0290025	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VXM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16952-RE	FBtr0340041	3980	1013aa	FBpp0309048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JFM8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16952-RA	FBtr0074114	3852	1026aa	FBpp0073924	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VXM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG16952-RB	FBtr0074115	3667	1026aa	FBpp0073925	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SY90 Q9VXM6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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