Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
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Genetic Variation
- Variant table
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ID History
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DB built by FlyBase

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Gene: CG3662 FBgn0031285

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Location

Primary_assembly 2L: 821,289-824,337 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 144 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3662-RD	FBtr0305507	1731	319aa	FBpp0293959	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VPT9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG3662-RB	FBtr0100469	2849	269aa	FBpp0099899	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q2PDW1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG3662-RA	FBtr0078012	1651	319aa	FBpp0077677	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T0C2 Q9VPT9	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG3662-RC	FBtr0301908	1570	319aa	FBpp0291122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VPT9	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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