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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG4896 FBgn0031319

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Gene Synonyms

Location

Primary_assembly 2L: 1,177,690-1,182,454 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants), 72 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4896-RD	FBtr0077968	3192	949aa	FBpp0077633	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A023GRW3 D0Z744 Q6NQZ3 Q8IHG7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4896-RJ	FBtr0335395	3956	262aa	FBpp0307378	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDC4	-	-
CG4896-RG	FBtr0308698	3781	262aa	FBpp0300904	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDC4	-	-
CG4896-RK	FBtr0344790	3193	947aa	FBpp0311118	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPW6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4896-RI	FBtr0335394	3118	265aa	FBpp0307377	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDX7	-	-

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Summary

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