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DB built by FlyBase

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Gene: OtopLb FBgn0031514

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Description

Otopetrin-like b

Gene Synonyms

Location

Primary_assembly 2L: 3,275,800-3,280,534 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 117 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
OtopLb-RA	FBtr0077609	2656	797aa	FBpp0077296	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VQN3	NM_134914 NM_134914.3 NP_608758 NP_608758.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
OtopLb-RC	FBtr0340589	2653	796aa	FBpp0309470	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JD17	NM_001298651 NM_001298651.1 NP_001285580 NP_001285580.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
OtopLb-RB	FBtr0077608	2216	629aa	FBpp0077295	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ02	NM_164531 NM_164531.2 NP_722888 NP_722888.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
OtopLb-RD	FBtr0344796	2206	647aa	FBpp0311124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J8I0	NM_001298652 NM_001298652.1 NP_001285581 NP_001285581.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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