Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Pgant5 FBgn0031681

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Description

Polypeptide N-Acetylgalactosaminyltransferase 5

Gene Synonyms

Location

Primary_assembly 2L: 5,072,170-5,093,592 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 149 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pgant5-RA	FBtr0079026	4364	630aa	FBpp0078663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6WV17	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Pgant5-RB	FBtr0111024	4340	630aa	FBpp0110323	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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