Summary
- Splice variants
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DB built by FlyBase

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Gene: Snx6 FBgn0032005

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Description

Sorting nexin 6

Gene Synonyms

Location

Primary_assembly 2L: 8,218,071-8,220,741 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 136 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Snx6-RB	FBtr0306170	1821	455aa	FBpp0297300	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDI3	NM_001259010 NM_001259010.2 NP_001245939 NP_001245939.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Snx6-RA	FBtr0079631	1803	449aa	FBpp0079247	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VLQ9	NM_135355 NM_135355.4 NP_609199 NP_609199.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays