Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene gain/loss tree
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG5390 FBgn0032213

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Gene Synonyms

Location

Primary_assembly 2L: 10,304,069-10,306,594 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 259 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5390-RA	FBtr0080064	1401	406aa	FBpp0079653	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86PE8 Q9VL01	NM_001298873.1 NM_135530 NM_135530.3 NP_001285802.1 NP_609374 NP_609374.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5390-RB	FBtr0344857	1372	406aa	FBpp0311172	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VL01	NM_001298873 NM_001298873.1 NM_135530.3 NP_001285802 NP_001285802.1 NP_609374.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays