Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Variant table
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DB built by FlyBase

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Gene: Spn42De FBgn0033115

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Description

Serpin 42De

Gene Synonyms

Location

Primary_assembly 2R: 6,885,552-6,888,262 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 222 orthologues and 28 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Spn42De-RA	FBtr0086164	1311	404aa	FBpp0085497	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SZF4	NM_136402 NM_136402.4 NP_610246 NP_610246.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Spn42De-RB	FBtr0309371	1387	386aa	FBpp0301273	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K6Q4	NM_001259226 NM_001259226.2 NP_001246155 NP_001246155.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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