Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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Pathway
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Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG6145 FBgn0033853

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Gene Synonyms

Location

Primary_assembly 2R: 13,537,371-13,547,577 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 156 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG6145-RC	FBtr0087686	2260	548aa	FBpp0086806	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IDH2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG6145-RA	FBtr0087685	2213	520aa	FBpp0086805	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9F0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG6145-RF	FBtr0300193	1989	484aa	FBpp0289430	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH61	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG6145-RE	FBtr0300192	1843	483aa	FBpp0289429	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JH60	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG6145-RB	FBtr0087687	1826	420aa	FBpp0086807	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SZX5	-	-

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Summary

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