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DB built by FlyBase

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Gene: Rcd1 FBgn0033897

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Description

Reduction in Cnn dots 1

Gene Synonyms

Location

Primary_assembly 2R: 14,148,263-14,153,123 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 8 transcripts (splice variants) and 65 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rcd1-RE	FBtr0310669	3864	1131aa	FBpp0302789	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF25	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Rcd1-RG	FBtr0310671	3804	1111aa	FBpp0302791	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFM5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RH	FBtr0339966	3795	1108aa	FBpp0308987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFC1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RB	FBtr0087583	3669	1066aa	FBpp0086709	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T076	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RD	FBtr0310668	3497	1066aa	FBpp0302788	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEP1 G2J5V2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RF	FBtr0310670	3437	1046aa	FBpp0302790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFX4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RA	FBtr0087582	3302	1001aa	FBpp0086708	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9L0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rcd1-RC	FBtr0087584	3139	934aa	FBpp0086710	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9L2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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