Reduction in Cnn dots 1
Primary_assembly 2R: 14,148,263-14,153,123 reverse strand.
BDGP6.32:AE013599.5
This gene has 8 transcripts (splice variants) and 109 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Rcd1-RE | FBtr0310669 | 3864 | 1131aa | FBpp0302789 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KF25 | NM_001274034 NM_001274034.2 NP_001260963 NP_001260963.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rcd1-RG | FBtr0310671 | 3804 | 1111aa | FBpp0302791 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFM5 | NM_001274036 NM_001274036.2 NP_001260965 NP_001260965.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RH | FBtr0339966 | 3795 | 1108aa | FBpp0308987 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LFC1 | NM_001299475 NM_001299475.1 NP_001286404 NP_001286404.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RB | FBtr0087583 | 3669 | 1066aa | FBpp0086709 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8T076 | NM_137083 NM_137083.4 NP_610927 NP_610927.3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RD | FBtr0310668 | 3497 | 1066aa | FBpp0302788 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KEP1 G2J5V2 | NM_001274033 NM_001274033.2 NP_001260962 NP_001260962.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RF | FBtr0310670 | 3437 | 1046aa | FBpp0302790 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFX4 | NM_001274035 NM_001274035.2 NP_001260964 NP_001260964.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RA | FBtr0087582 | 3302 | 1001aa | FBpp0086708 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A1Z9L0 | NM_166031 NM_166031.3 NP_725357 NP_725357.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rcd1-RC | FBtr0087584 | 3139 | 934aa | FBpp0086710 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A1Z9L2 | NM_166032 NM_166032.3 NP_725358 NP_725358.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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