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DB built by FlyBase

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Gene: CG5522 FBgn0034158

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Location

Primary_assembly 2R: 16,783,671-16,792,472 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 69 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5522-RE	FBtr0087029	3627	702aa	FBpp0086180	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E949	NM_166193.2 NM_166194.2 NM_166195 NM_166195.2 NP_725613.1 NP_725614.1 NP_725615 NP_725615.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5522-RB	FBtr0087030	3589	702aa	FBpp0086181	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E949	NM_166193.2 NM_166194 NM_166194.2 NM_166195.2 NP_725613.1 NP_725614 NP_725614.1 NP_725615.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5522-RC	FBtr0087028	3516	665aa	FBpp0086179	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT78	NM_137314 NM_137314.3 NM_166196.2 NM_166197.2 NP_611158 NP_611158.1 NP_725616.1 NP_725617.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5522-RA	FBtr0087026	3488	702aa	FBpp0086177	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E949	NM_166193 NM_166193.2 NM_166194.2 NM_166195.2 NP_725613 NP_725613.1 NP_725614.1 NP_725615.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5522-RF	FBtr0087031	3478	665aa	FBpp0086182	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT78 Q95RX1	NM_137314.3 NM_166196.2 NM_166197 NM_166197.2 NP_611158.1 NP_725616.1 NP_725617 NP_725617.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5522-RD	FBtr0087027	2358	665aa	FBpp0086178	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MT78	NM_137314.3 NM_166196 NM_166196.2 NM_166197.2 NP_611158.1 NP_725616 NP_725616.1 NP_725617.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays