Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
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- Gene gain/loss tree
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Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
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- Variant table
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DB built by FlyBase

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Gene: CG5098 FBgn0034300

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Gene Synonyms

Location

Primary_assembly 2R: 18,094,940-18,101,031 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants) and 57 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5098-RC	FBtr0329994	5154	1339aa	FBpp0303029	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFU8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG5098-RB	FBtr0113092	5166	1328aa	FBpp0112005	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG5098-RD	FBtr0346952	5154	1324aa	FBpp0312417	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUN5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5098-RA	FBtr0086732	4842	1238aa	FBpp0085911	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AWG9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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