Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: CG5098 FBgn0034300

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Location

Primary_assembly 2R: 18,094,940-18,101,031 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants) and 99 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5098-RC	FBtr0329994	5154	1339aa	FBpp0303029	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFU8	NM_001274137 NM_001274137.1 NP_001261066 NP_001261066.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5098-RB	FBtr0113092	5166	1328aa	FBpp0112005	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_001103893 NM_001103893.2 NP_001097363 NP_001097363.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5098-RD	FBtr0346952	5154	1324aa	FBpp0312417	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUN5	NM_001316427 NM_001316427.1 NP_001303356 NP_001303356.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5098-RA	FBtr0086732	4842	1238aa	FBpp0085911	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AWG9	NM_001103893.2 NM_137447 NM_137447.4 NP_001097363.1 NP_611291 NP_611291.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays