Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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- Structural variants
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DB built by FlyBase

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Gene: CG15117 FBgn0034417

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Location

Primary_assembly 2R: 19,122,231-19,129,300 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 107 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG15117-RB	FBtr0086594	2338	670aa	FBpp0085778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZBG9 Q6NL66	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15117-RF	FBtr0340459	2707	623aa	FBpp0309401	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFU6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG15117-RA	FBtr0086593	2487	656aa	FBpp0085777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K173	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG15117-RE	FBtr0340458	2380	623aa	FBpp0309400	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFU6	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG15117-RC	FBtr0100129	2211	656aa	FBpp0099475	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZBH0 C8VV29	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG15117-RD	FBtr0340457	2191	648aa	FBpp0309399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGY4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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