Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG9380 FBgn0035094

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Location

Primary_assembly 2R: 25,183,628-25,255,318 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants) and 70 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG9380-RG	FBtr0333173	2668	850aa	FBpp0305376	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8V8	NM_001043106 NM_001043106.2 NP_001036571 NP_001036571.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG9380-RF	FBtr0333172	3550	840aa	FBpp0305375	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MLN4	NM_001274250 NM_001274250.1 NM_001274251.1 NM_166707.2 NP_001261179 NP_001261179.1 NP_001261180.1 NP_726511.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9380-RE	FBtr0333171	2989	840aa	FBpp0305374	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0PVB1 C0PVB5 Q6NP37 Q8MLN4	NM_001274250.1 NM_001274251 NM_001274251.1 NM_166707.2 NP_001261179.1 NP_001261180 NP_001261180.1 NP_726511.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG9380-RD	FBtr0333170	2745	840aa	FBpp0305373	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MLN4	NM_001274250.1 NM_001274251.1 NM_166707 NM_166707.2 NP_001261179.1 NP_001261180.1 NP_726511 NP_726511.2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays