Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
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DB built by FlyBase

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Gene: JMJD5 FBgn0035166

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Description

Jumonji domain containing 5

Gene Synonyms

Location

Primary_assembly 3L: 839,980-841,360 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 122 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
JMJD5-RB	FBtr0300712	1330	401aa	FBpp0289936	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0M3	NM_138219 NM_138219.3 NP_612063 NP_612063.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
JMJD5-RC	FBtr0331402	1309	394aa	FBpp0303819	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDS1	NM_001274296 NM_001274296.1 NP_001261225 NP_001261225.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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