Cdc42-interacting protein 4
Primary_assembly 3L: 4,322,491-4,364,102 reverse strand.
BDGP6.32:AE014296.5
This gene has 11 transcripts (splice variants) and 148 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Cip4-RB | FBtr0113138 | 2637 | 665aa | FBpp0112051 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JNK4 C6SV38 Q8SYR8 | NM_001104031 NM_001104031.2 NP_001097501 NP_001097501.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Cip4-RG | FBtr0306534 | 3507 | 612aa | FBpp0297492 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NE16 | NM_001259690 NM_001259690.2 NM_001259691.2 NP_001246619 NP_001246619.1 NP_001246620.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RK | FBtr0333571 | 3504 | 611aa | FBpp0305748 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PE52 | NM_001274484 NM_001274484.1 NP_001261413 NP_001261413.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RJ | FBtr0333570 | 3477 | 602aa | FBpp0305747 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PBP3 | NM_001274483 NM_001274483.1 NP_001261412 NP_001261412.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RH | FBtr0308201 | 3422 | 644aa | FBpp0300521 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D5SHU5 M9ND42 | NM_001259687 NM_001259687.2 NP_001246616 NP_001246616.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RI | FBtr0308202 | 3359 | 623aa | FBpp0300522 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NF07 | NM_001259688 NM_001259688.2 NP_001246617 NP_001246617.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RD | FBtr0306095 | 2580 | 646aa | FBpp0297232 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9ND44 | NM_001259692 NM_001259692.1 NP_001246621 NP_001246621.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RA | FBtr0073339 | 2525 | 631aa | FBpp0073195 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VZD7 | NM_139636 NM_139636.4 NP_647893 NP_647893.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RE | FBtr0306096 | 2504 | 624aa | FBpp0297233 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NF10 | NM_001259693 NM_001259693.2 NP_001246622 NP_001246622.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RC | FBtr0306094 | 2468 | 612aa | FBpp0297231 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NE16 | NM_001259690.2 NM_001259691 NM_001259691.2 NP_001246619.1 NP_001246620 NP_001246620.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cip4-RF | FBtr0306533 | 2414 | 628aa | FBpp0297491 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9NDH6 | NM_001259689 NM_001259689.1 NP_001246618 NP_001246618.1 | - |
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