Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG4911 FBgn0035959

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Gene Synonyms

Location

Primary_assembly 3L: 9,067,195-9,072,731 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants) and 111 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4911-RC	FBtr0345351	4775	450aa	FBpp0311506	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VST7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG4911-RA	FBtr0076542	2321	450aa	FBpp0076269	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RW0 Q9VST7	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG4911-RB	FBtr0331549	2318	449aa	FBpp0303939	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEL5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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