Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG8336 FBgn0036020

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Location

Primary_assembly 3L: 9,628,676-9,631,795 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 110 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG8336-RB	FBtr0076384	1555	383aa	FBpp0076113	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT21	NM_001274707.1 NM_140081.3 NM_168354 NM_168354.2 NM_168355.3 NP_001261636.1 NP_648338.1 NP_729517 NP_729517.1 NP_729518.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG8336-RA	FBtr0076385	1500	383aa	FBpp0076114	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT21	NM_001274707.1 NM_140081 NM_140081.3 NM_168354.2 NM_168355.3 NP_001261636.1 NP_648338 NP_648338.1 NP_729517.1 NP_729518.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG8336-RC	FBtr0076386	1445	383aa	FBpp0076115	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT21	NM_001274707.1 NM_140081.3 NM_168354.2 NM_168355 NM_168355.3 NP_001261636.1 NP_648338.1 NP_729517.1 NP_729518 NP_729518.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG8336-RD	FBtr0333855	1395	383aa	FBpp0305988	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT21	NM_001274707 NM_001274707.1 NM_140081.3 NM_168354.2 NM_168355.3 NP_001261636 NP_001261636.1 NP_648338.1 NP_729517.1 NP_729518.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays