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- Splice variants
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DB built by FlyBase

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Gene: cmb FBgn0036365

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Description

combover

Gene Synonyms

Location

Primary_assembly 3L: 13,442,594-13,449,245 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 44 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
cmb-RA	FBtr0075851	5299	1657aa	FBpp0075586	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VU76	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
cmb-RC	FBtr0331533	5206	1626aa	FBpp0303923	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFI2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cmb-RD	FBtr0331534	5200	1624aa	FBpp0303924	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFE5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
cmb-RB	FBtr0075852	3249	809aa	FBpp0075587	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q961X4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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