Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG3919 FBgn0036423

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Gene Synonyms

Location

Primary_assembly 3L: 14,410,626-14,412,732 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 72 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3919-RC	FBtr0333040	1406	318aa	FBpp0305254	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PF86	NM_001274911 NM_001274911.1 NP_001261840 NP_001261840.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG3919-RB	FBtr0273239	1358	302aa	FBpp0271747	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KUK4 Q8T0A1	NM_140446 NM_140446.3 NP_648703 NP_648703.4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays