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Summary
- Splice variants
- Transcript comparison
- Gene alleles
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DB built by FlyBase

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Gene: CG4998 FBgn0036612

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Location

Primary_assembly 3L: 16,339,003-16,345,241 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 2 transcripts (splice variants), 82 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4998-RB	FBtr0110866	4192	1185aa	FBpp0110166	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8E2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG4998-RA	FBtr0075377	3310	891aa	FBpp0075136	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VV38	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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