Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: RhoBTB FBgn0036980

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Description

Rho-related BTB domain containing

Gene Synonyms

Location

Primary_assembly 3L: 20,376,242-20,382,398 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 156 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RhoBTB-RB	FBtr0330157	3257	783aa	FBpp0303190	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG08	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
RhoBTB-RA	FBtr0078185	3257	745aa	FBpp0077843	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KJ62 Q9VPG7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RhoBTB-RC	FBtr0330158	2974	738aa	FBpp0303191	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PIB5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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