Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CG12974 FBgn0037065

.

Location

Primary_assembly 3L: 21,281,752-21,285,962 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 46 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12974-RD	FBtr0345804	1844	363aa	FBpp0311790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTW4	NM_001300210 NM_001300210.1 NM_168895.3 NP_001287139 NP_001287139.1 NP_730613.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12974-RC	FBtr0332860	1972	330aa	FBpp0305082	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VP58	NM_001275213 NM_001275213.1 NM_141039.1 NP_001262142 NP_001262142.1 NP_649296.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12974-RB	FBtr0078411	1606	363aa	FBpp0078065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTW4 Q8MRA7	NM_001300210.1 NM_168895 NM_168895.3 NP_001287139.1 NP_730613 NP_730613.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG12974-RA	FBtr0078410	1442	330aa	FBpp0078064	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VP58	NM_001275213.1 NM_141039 NM_141039.1 NP_001262142.1 NP_649296 NP_649296.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.

Gene-based displays