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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: srl FBgn0037248

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Description

spargel

Gene Synonyms

Location

Primary_assembly 3R: 4,422,483-4,429,335 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 51 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
srl-RB	FBtr0078946	4568	1067aa	FBpp0078586	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPM1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
srl-RE	FBtr0336458	4237	1067aa	FBpp0307564	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NPA7 Q8IPM1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
srl-RD	FBtr0301244	4136	1058aa	FBpp0290462	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U183 Q8IH74 Q8IPM0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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