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DB built by FlyBase

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Gene: ATP8B FBgn0037989

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Description

ATPase 8B

Gene Synonyms

Location

Primary_assembly 3R: 12,068,375-12,090,612 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 232 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ATP8B-RB	FBtr0300351	6697	1726aa	FBpp0289580	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3ZAM1 Q9VGD4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ATP8B-RC	FBtr0307015	6500	1547aa	FBpp0297858	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K638	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ATP8B-RH	FBtr0339645	6458	1533aa	FBpp0308707	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K756	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ATP8B-RG	FBtr0339644	6245	1462aa	FBpp0308706	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH21	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ATP8B-RI	FBtr0339646	6203	1448aa	FBpp0308708	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH79	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ATP8B-RD	FBtr0307016	6007	1496aa	FBpp0297859	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K669	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ATP8B-RF	FBtr0339643	5810	1317aa	FBpp0308705	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LH22	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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