Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG6125 FBgn0038337

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Gene Synonyms

Location

Primary_assembly 3R: 15,402,598-15,407,070 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 174 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG6125-RA	FBtr0083106	2153	640aa	FBpp0082560	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGY4 Q9VF65	NM_169656 NM_169656.2 NP_732032 NP_732032.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG6125-RC	FBtr0346109	2406	611aa	FBpp0311938	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SYW1	NM_001300409 NM_001300409.1 NM_142208.3 NP_001287338 NP_001287338.1 NP_650465.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG6125-RB	FBtr0083105	2197	611aa	FBpp0082559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SYW1	NM_001300409.1 NM_142208 NM_142208.3 NP_001287338.1 NP_650465 NP_650465.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays