Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Cellular component
- GO: Molecular function
- GO: Biological process
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG10407 FBgn0038395

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Gene Synonyms

Location

Primary_assembly 3R: 16,044,747-16,046,130 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 45 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG10407-RC	FBtr0347558	966	263aa	FBpp0312591	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUV0	NM_001316537 NM_001316537.1 NP_001303466 NP_001303466.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG10407-RB	FBtr0336487	1113	259aa	FBpp0307590	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEZ6	NM_001275693 NM_001275693.1 NM_142262.2 NP_001262622 NP_001262622.1 NP_650519.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG10407-RA	FBtr0083237	954	259aa	FBpp0082691	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZWP8 C1C588 Q9VEZ6	NM_001275693.1 NM_142262 NM_142262.2 NP_001262622.1 NP_650519 NP_650519.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays