Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
- Variant image
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Gene expression
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DB built by FlyBase

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Gene: CG18622 FBgn0038460

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Location

Primary_assembly 3R: 16,983,510-16,987,732 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 47 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG18622-RC	FBtr0346338	949	94aa	FBpp0312055	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEQ3	NM_001275720.1 NM_001300437 NM_001300437.1 NM_142322.2 NP_001262649.1 NP_001287366 NP_001287366.1 NP_650579.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG18622-RA	FBtr0083377	837	94aa	FBpp0082820	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEQ3	NM_001275720.1 NM_001300437.1 NM_142322 NM_142322.2 NP_001262649.1 NP_001287366.1 NP_650579 NP_650579.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG18622-RB	FBtr0337065	752	94aa	FBpp0307994	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEQ3	NM_001275720 NM_001275720.1 NM_001300437.1 NM_142322.2 NP_001262649 NP_001262649.1 NP_001287366.1 NP_650579.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays