Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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DB built by FlyBase

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Gene: CG18213 FBgn0038470

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Location

Primary_assembly 3R: 17,036,394-17,040,203 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 19 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG18213-RB	FBtr0305129	2997	879aa	FBpp0293659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5RIR2 G4LU64 Q86NX8 Q9VEP2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG18213-RC	FBtr0339156	2994	878aa	FBpp0308300	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHB6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG18213-RD	FBtr0339157	2988	876aa	FBpp0308301	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIB3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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