Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by FlyBase

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Gene: CG6231 FBgn0038720

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Gene Synonyms

Location

Primary_assembly 3R: 19,616,024-19,632,718 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 343 orthologues and 39 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG6231-RA	FBtr0083810	3096	585aa	FBpp0083220	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDV5	NM_001275805.1 NM_001275806.1 NM_142562 NM_142562.3 NM_169864.2 NM_169865.2 NM_169866.3 NP_001262734.1 NP_001262735.1 NP_650819 NP_650819.1 NP_732435.1 NP_732436.1 NP_732437.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG6231-RC	FBtr0083807	2954	585aa	FBpp0083217	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDV5	NM_001275805.1 NM_001275806.1 NM_142562.3 NM_169864.2 NM_169865 NM_169865.2 NM_169866.3 NP_001262734.1 NP_001262735.1 NP_650819.1 NP_732435.1 NP_732436 NP_732436.1 NP_732437.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG6231-RD	FBtr0083808	2884	585aa	FBpp0083218	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDV5	NM_001275805.1 NM_001275806.1 NM_142562.3 NM_169864.2 NM_169865.2 NM_169866 NM_169866.3 NP_001262734.1 NP_001262735.1 NP_650819.1 NP_732435.1 NP_732436.1 NP_732437 NP_732437.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG6231-RB	FBtr0083809	2804	585aa	FBpp0083219	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDV5	NM_001275805.1 NM_001275806.1 NM_142562.3 NM_169864 NM_169864.2 NM_169865.2 NM_169866.3 NP_001262734.1 NP_001262735.1 NP_650819.1 NP_732435 NP_732435.1 NP_732436.1 NP_732437.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG6231-RF	FBtr0334924	2730	585aa	FBpp0306944	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q494L0 Q8SX51 Q9VDV5	NM_001275805.1 NM_001275806 NM_001275806.1 NM_142562.3 NM_169864.2 NM_169865.2 NM_169866.3 NP_001262734.1 NP_001262735 NP_001262735.1 NP_650819.1 NP_732435.1 NP_732436.1 NP_732437.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG6231-RE	FBtr0334923	2720	585aa	FBpp0306943	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDV5	NM_001275805 NM_001275805.1 NM_001275806.1 NM_142562.3 NM_169864.2 NM_169865.2 NM_169866.3 NP_001262734 NP_001262734.1 NP_001262735.1 NP_650819.1 NP_732435.1 NP_732436.1 NP_732437.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays