Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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Regulation
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Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG5380 FBgn0038951

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Location

Primary_assembly 3R: 22,366,080-22,367,373 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 2 transcripts (splice variants) and 114 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5380-RB	FBtr0305320	1102	293aa	FBpp0293863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D5SHN0 Q9VD25	NM_001260308 NM_001260308.1 NM_142772.1 NP_001247237 NP_001247237.1 NP_651029.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5380-RA	FBtr0084236	1022	293aa	FBpp0083629	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D5SHN0 Q9VD25	NM_001260308.1 NM_142772 NM_142772.1 NP_001247237.1 NP_651029 NP_651029.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays