Summary
- Splice variants
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DB built by FlyBase

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Gene: Rad60 FBgn0039065

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Description

Rad60

Gene Synonyms

Location

Primary_assembly 3R: 23,249,443-23,251,477 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants) and 6 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rad60-RA	FBtr0084388	1677	424aa	FBpp0083780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0RNC3 Q9VCP1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Rad60-RB	FBtr0301088	1671	422aa	FBpp0290310	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rad60-RD	FBtr0334500	1500	424aa	FBpp0306567	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E4NKN5 H0RNC3 Q9VCP1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Rad60-RE	FBtr0334501	1497	423aa	FBpp0306568	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHY5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rad60-RC	FBtr0334499	1494	422aa	FBpp0306566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Rad60-RF	FBtr0334502	1491	421aa	FBpp0306569	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHP8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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