Summary
- Splice variants
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- GO: Cellular component
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DB built by FlyBase

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Gene: Lsd-1 FBgn0039114

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Description

Lipid storage droplet-1

Gene Synonyms

Location

Primary_assembly 3R: 23,763,857-23,766,662 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 75 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lsd-1-RA	FBtr0084455	1510	431aa	FBpp0083846	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E4NKM5 I0B1Q0 Q9VCI3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Lsd-1-RC	FBtr0084456	1813	405aa	FBpp0083847	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHZ1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Lsd-1-RB	FBtr0084457	1501	325aa	FBpp0083848	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Lsd-1-RD	FBtr0335002	1432	405aa	FBpp0307010	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHZ1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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