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DB built by FlyBase

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Gene: spas FBgn0039141

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Description

spastin

Gene Synonyms

Location

Primary_assembly 3R: 24,038,215-24,042,982 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 124 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
spas-RA	FBtr0084533	3601	758aa	FBpp0083918	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0P1	NM_001316509.1 NM_142949.4 NM_170115 NM_170115.3 NP_001303438.1 NP_651206.3 NP_732941 NP_732941.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
spas-RD	FBtr0346099	3743	696aa	FBpp0311932	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHJ5	NM_001275967.2 NM_001300565 NM_001300565.1 NP_001262896.1 NP_001287494 NP_001287494.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spas-RF	FBtr0445311	3147	489aa	FBpp0401488	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV13	NM_001316508 NM_001316508.1 NP_001303437 NP_001303437.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spas-RC	FBtr0321260	3147	696aa	FBpp0302812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHJ5	NM_001275967 NM_001275967.2 NM_001300565.1 NP_001262896 NP_001262896.1 NP_001287494.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spas-RE	FBtr0445310	2810	551aa	FBpp0401487	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV10	NM_001316509 NM_001316509.1 NP_001303438 NP_001303438.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spas-RB	FBtr0084534	2791	758aa	FBpp0083919	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0P1	NM_001316509.1 NM_142949 NM_142949.4 NM_170115.3 NP_001303438.1 NP_651206 NP_651206.3 NP_732941.2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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Gene-based displays