spastin
Primary_assembly 3R: 24,038,215-24,042,982 forward strand.
BDGP6.32:AE014297.3
This gene has 6 transcripts (splice variants), 124 orthologues and 7 paralogues.
Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|
spas-RA | FBtr0084533 | 3601 | 758aa | FBpp0083918 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0P1 | NM_001316509.1 NM_142949.4 NM_170115 NM_170115.3 NP_001303438.1 NP_651206.3 NP_732941 NP_732941.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
spas-RD | FBtr0346099 | 3743 | 696aa | FBpp0311932 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LHJ5 | NM_001275967.2 NM_001300565 NM_001300565.1 NP_001262896.1 NP_001287494 NP_001287494.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
spas-RF | FBtr0445311 | 3147 | 489aa | FBpp0401488 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GV13 | NM_001316508 NM_001316508.1 NP_001303437 NP_001303437.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
spas-RC | FBtr0321260 | 3147 | 696aa | FBpp0302812 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4LHJ5 | NM_001275967 NM_001275967.2 NM_001300565.1 NP_001262896 NP_001262896.1 NP_001287494.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
spas-RE | FBtr0445310 | 2810 | 551aa | FBpp0401487 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A126GV10 | NM_001316509 NM_001316509.1 NP_001303438 NP_001303438.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
spas-RB | FBtr0084534 | 2791 | 758aa | FBpp0083919 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0P1 | NM_001316509.1 NM_142949 NM_142949.4 NM_170115.3 NP_001303438.1 NP_651206 NP_651206.3 NP_732941.2 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |