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DB built by FlyBase

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Gene: spas FBgn0039141

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Description

spastin

Gene Synonyms

Location

Primary_assembly 3R: 24,038,215-24,042,982 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 66 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
spas-RA	FBtr0084533	3601	758aa	FBpp0083918	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0P1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
spas-RD	FBtr0346099	3743	696aa	FBpp0311932	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHJ5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
spas-RC	FBtr0321260	3147	696aa	FBpp0302812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LHJ5	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
spas-RF	FBtr0445311	3147	489aa	FBpp0401488	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV13	-	-
spas-RE	FBtr0445310	2810	551aa	FBpp0401487	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GV10	-	-
spas-RB	FBtr0084534	2791	758aa	FBpp0083919	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I0P1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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