Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG13606 FBgn0039161

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Gene Synonyms

Location

Primary_assembly 3R: 24,172,628-24,184,144 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 39 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG13606-RD	FBtr0344266	706	134aa	FBpp0310671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LIJ3	NM_001300569 NM_001300569.1 NP_001287498 NP_001287498.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG13606-RA	FBtr0084553	1158	99aa	FBpp0083938	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VCC1	NM_142968 NM_142968.3 NP_651225 NP_651225.1	-
CG13606-RC	FBtr0335412	937	94aa	FBpp0307395	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGW5	NM_001275971 NM_001275971.2 NP_001262900 NP_001262900.1	-
CG13606-RB	FBtr0110794	703	133aa	FBpp0110091	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0KI21	NM_001043285 NM_001043285.3 NP_001036750 NP_001036750.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays