Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG5746 FBgn0039186

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Location

Primary_assembly 3R: 24,343,895-24,348,791 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 7 transcripts (splice variants) and 10 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5746-RC	FBtr0273282	2679	480aa	FBpp0271790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGI0	NM_001144634 NM_001144634.2 NM_001144635.2 NP_001138106 NP_001138106.1 NP_001138107.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5746-RG	FBtr0334603	4498	454aa	FBpp0306670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHS5	NM_001275985 NM_001275985.1 NP_001262914 NP_001262914.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5746-RF	FBtr0334602	2661	474aa	FBpp0306669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KI02	NM_001275984 NM_001275984.1 NP_001262913 NP_001262913.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5746-RB	FBtr0084630	2610	457aa	FBpp0084014	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RR2 Q9VC90	NM_142991.3 NM_170140 NM_170140.2 NP_651248.2 NP_732983 NP_732983.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5746-RE	FBtr0334601	2592	451aa	FBpp0306668	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHD9 Q95RR2	NM_001275983 NM_001275983.1 NP_001262912 NP_001262912.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG5746-RD	FBtr0273283	2581	480aa	FBpp0271791	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IGI0	NM_001144634.2 NM_001144635 NM_001144635.2 NP_001138106.1 NP_001138107 NP_001138107.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG5746-RA	FBtr0084631	2509	457aa	FBpp0084015	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VC90	NM_142991 NM_142991.3 NM_170140.2 NP_651248 NP_651248.2 NP_732983.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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