Summary
- Splice variants
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DB built by FlyBase

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Gene: snu FBgn0039594

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Description

snustorr

Gene Synonyms

Location

Primary_assembly 3R: 28,675,041-28,695,939 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 171 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
snu-RA	FBtr0085308	3746	808aa	FBpp0084677	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VAU1	NM_143371 NM_143371.2 NP_651628 NP_651628.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
snu-RB	FBtr0085309	3802	777aa	FBpp0084678	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86LC8 Q8IMM1	NM_170376 NM_170376.1 NP_733255 NP_733255.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
snu-RD	FBtr0303343	3760	763aa	FBpp0292406	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD13	NM_001202376 NM_001202376.1 NP_001189305 NP_001189305.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
snu-RG	FBtr0336787	3586	764aa	FBpp0307763	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHS4	NM_001276111 NM_001276111.1 NP_001263040 NP_001263040.1	-
snu-RF	FBtr0305088	3555	775aa	FBpp0293625	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B9EQW2	NM_001260422 NM_001260422.1 NP_001247351 NP_001247351.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
snu-RE	FBtr0305087	3145	766aa	FBpp0293624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K7B3	NM_001260421 NM_001260421.1 NP_001247350 NP_001247350.1	-

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Summary

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Gene-based displays