Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
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- Paralogues
Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
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DB built by FlyBase

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Gene: CG17167 FBgn0039941

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Gene Synonyms

Location

Primary_assembly X: 23,068,301-23,081,144 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 219 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG17167-RD	FBtr0300807	2506	522aa	FBpp0290031	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2VEW9 Q7PLW4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG17167-RF	FBtr0340048	2597	500aa	FBpp0309055	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A021WWX0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17167-RE	FBtr0340047	2546	409aa	FBpp0309054	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A021WW37	-	-
CG17167-RC	FBtr0300806	2503	521aa	FBpp0290030	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJY0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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