Summary
- Splice variants
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DB built by FlyBase

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Gene: Set1 FBgn0040022

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Description

SET domain containing 1

Gene Synonyms

Location

Primary_assembly 3L: 25,107,594-25,115,180 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 9 transcripts (splice variants), 133 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Set1-RC	FBtr0113870	5495	1641aa	FBpp0112593	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RB	FBtr0113871	5486	1641aa	FBpp0112594	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RE	FBtr0302244	5326	1641aa	FBpp0291453	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RI	FBtr0302248	5317	1641aa	FBpp0291457	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RD	FBtr0302243	5311	1641aa	FBpp0291452	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RA	FBtr0113869	5303	1641aa	FBpp0112592	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221 NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RF	FBtr0302245	5290	1641aa	FBpp0291454	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377 NM_001170377.1 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848 NP_001163848.1 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RG	FBtr0302246	5279	1641aa	FBpp0291455	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378 NM_001170378.1 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849 NP_001163849.1 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Set1-RH	FBtr0302247	5276	1641aa	FBpp0291456	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJZ2	NM_001015221.3 NM_001015222.3 NM_001110936.3 NM_001170375.2 NM_001170376.2 NM_001170377.1 NM_001170378.1 NM_001170379 NM_001170379.1 NM_001170380.2 NP_001015221.1 NP_001015222.1 NP_001104406.1 NP_001163846.1 NP_001163847.1 NP_001163848.1 NP_001163849.1 NP_001163850 NP_001163850.1 NP_001163851.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays