Summary
- Splice variants
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Sequence
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Pcyt1 FBgn0041342

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Description

Phosphocholine cytidylyltransferase 1

Gene Synonyms

Location

Primary_assembly 3L: 1,546,092-1,553,504 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 90 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pcyt1-RF	FBtr0345365	2754	526aa	FBpp0311519	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335.1 NM_001299969 NM_001299969.1 NM_139364.3 NM_167892.2 NM_167893.2 NM_167894.2 NP_001261264.1 NP_001286898 NP_001286898.1 NP_647621.1 NP_728626.1 NP_728627.1 NP_728628.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pcyt1-RE	FBtr0333396	2564	526aa	FBpp0305588	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335 NM_001274335.1 NM_001299969.1 NM_139364.3 NM_167892.2 NM_167893.2 NM_167894.2 NP_001261264 NP_001261264.1 NP_001286898.1 NP_647621.1 NP_728626.1 NP_728627.1 NP_728628.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pcyt1-RD	FBtr0072739	2529	526aa	FBpp0072622	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335.1 NM_001299969.1 NM_139364.3 NM_167892.2 NM_167893.2 NM_167894 NM_167894.2 NP_001261264.1 NP_001286898.1 NP_647621.1 NP_728626.1 NP_728627.1 NP_728628 NP_728628.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pcyt1-RA	FBtr0072738	2486	526aa	FBpp0072621	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335.1 NM_001299969.1 NM_139364 NM_139364.3 NM_167892.2 NM_167893.2 NM_167894.2 NP_001261264.1 NP_001286898.1 NP_647621 NP_647621.1 NP_728626.1 NP_728627.1 NP_728628.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pcyt1-RB	FBtr0072740	2407	526aa	FBpp0072623	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335.1 NM_001299969.1 NM_139364.3 NM_167892 NM_167892.2 NM_167893.2 NM_167894.2 NP_001261264.1 NP_001286898.1 NP_647621.1 NP_728626 NP_728626.1 NP_728627.1 NP_728628.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
Pcyt1-RC	FBtr0072741	2302	526aa	FBpp0072624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K4C7	NM_001274335.1 NM_001299969.1 NM_139364.3 NM_167892.2 NM_167893 NM_167893.2 NM_167894.2 NP_001261264.1 NP_001286898.1 NP_647621.1 NP_728626.1 NP_728627 NP_728627.1 NP_728628.1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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