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DB built by FlyBase

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Gene: SCAR FBgn0041781

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Description

SCAR

Gene Synonyms

Location

Primary_assembly 2L: 10,976,772-10,982,395 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 6 transcripts (splice variants) and 131 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SCAR-RD	FBtr0329949	3118	674aa	FBpp0302981	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2FB81	NM_001273439 NM_001273439.2 NP_001260368 NP_001260368.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
SCAR-RF	FBtr0340223	3037	647aa	FBpp0309198	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J5L4	NM_001298895 NM_001298895.1 NP_001285824 NP_001285824.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SCAR-RC	FBtr0305256	2914	640aa	FBpp0293780	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCT2	NM_001259038 NM_001259038.3 NP_001245967 NP_001245967.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SCAR-RE	FBtr0329950	2833	632aa	FBpp0302982	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCP4	NM_001273440 NM_001273440.2 NP_001260369 NP_001260369.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SCAR-RB	FBtr0305255	2815	641aa	FBpp0293779	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C1C3C5 H5V8D0	NM_001259037 NM_001259037.3 NP_001245966 NP_001245966.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SCAR-RA	FBtr0080148	2292	613aa	FBpp0079737	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKM2	NM_135633 NM_135633.4 NP_609477 NP_609477.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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Gene-based displays