visgun
Primary_assembly 3L: 9,714,324-9,717,716 forward strand.
BDGP6.32:AE014296.5
This gene has 5 transcripts (splice variants) and 24 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| vsg-RE | FBtr0330097 | 2164 | 262aa | FBpp0303130 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PHX2 | NM_001274717 NM_001274717.1 NP_001261646 NP_001261646.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| vsg-RD | FBtr0076400 | 2273 | 183aa | FBpp0076129 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VT37 | NM_140092.2 NM_168362 NM_168362.2 NP_648349.1 NP_729534 NP_729534.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| vsg-RA | FBtr0076398 | 2270 | 182aa | FBpp0076127 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0D8 | NM_168363 NM_168363.2 NM_168364.2 NP_729535 NP_729535.1 NP_729536.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| vsg-RC | FBtr0076401 | 2167 | 183aa | FBpp0076130 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VT37 | NM_140092 NM_140092.2 NM_168362.2 NP_648349 NP_648349.1 NP_729534.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| vsg-RB | FBtr0076399 | 2164 | 182aa | FBpp0076128 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8I0D8 | NM_168363.2 NM_168364 NM_168364.2 NP_729535.1 NP_729536 NP_729536.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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