Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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DB built by FlyBase

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Gene: metro FBgn0050021

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Description

menage a trois

Gene Synonyms

Location

Primary_assembly 2R: 11,226,458-11,232,516 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 134 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
metro-RA	FBtr0088196	2782	595aa	FBpp0087292	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z8G0	NM_136798 NM_136798.3 NP_610642 NP_610642.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
metro-RC	FBtr0114570	2752	585aa	FBpp0113062	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZF0	NM_001144171 NM_001144171.2 NP_001137643 NP_001137643.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
metro-RB	FBtr0114569	2665	556aa	FBpp0113061	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T5S9	NM_001144170 NM_001144170.2 NP_001137642 NP_001137642.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
metro-RD	FBtr0339484	2635	546aa	FBpp0308566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF49	NM_001299380 NM_001299380.1 NP_001286309 NP_001286309.1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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Gene-based displays