Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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DB built by FlyBase

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Gene: CG31122 FBgn0051122

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Location

Primary_assembly 3R: 18,406,064-18,412,874 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 109 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG31122-RD	FBtr0474142	2993	663aa	FBpp0423141	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VE69	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG31122-RC	FBtr0333831	3439	525aa	FBpp0305965	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGF5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG31122-RB	FBtr0301432	2993	524aa	FBpp0290647	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQJ5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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