Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
- Variant table
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- Structural variants
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DB built by FlyBase

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Gene: CG31522 FBgn0051522

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Location

Primary_assembly 3R: 4,441,415-4,462,883 reverse strand.

BDGP6.32:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 134 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG31522-RI	FBtr0335432	2964	392aa	FBpp0307413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF65	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG31522-RF	FBtr0306343	2883	365aa	FBpp0297436	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPL8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG31522-RD	FBtr0078941	2760	365aa	FBpp0078581	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPL8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG31522-RA	FBtr0078942	2460	364aa	FBpp0078582	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VN29	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG31522-RG	FBtr0306344	2352	364aa	FBpp0297437	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VN29	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG31522-RB	FBtr0078939	2216	365aa	FBpp0078579	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3PFF0 D3PFF2 Q8IPL8	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG31522-RH	FBtr0335431	2213	364aa	FBpp0307412	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VN29	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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