Reticulon-like1
Primary_assembly 2L: 4,992,808-5,009,720 reverse strand.
BDGP6.32:AE014134.6
This gene has 11 transcripts (splice variants), 53 orthologues and 1 paralogue.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Rtnl1-RH | FBtr0301538 | 2231 | 607aa | FBpp0290753 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JHT6 Q6NP20 | NM_001169404 NM_001169404.2 NP_001162875 NP_001162875.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| Rtnl1-RF | FBtr0079038 | 2700 | 595aa | FBpp0078674 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VMV9 | NM_175969 NM_175969.3 NP_787983 NP_787983.1 | - |
| Rtnl1-RJ | FBtr0301540 | 2311 | 234aa | FBpp0290755 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTP4 | NM_001169405.2 NM_001169406 NM_001169406.2 NM_175970.3 NM_175971.3 NP_001162876.1 NP_001162877 NP_001162877.1 NP_787984.1 NP_787985.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rtnl1-RG | FBtr0079044 | 2271 | 224aa | FBpp0078680 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C6TP45 Q9VMW1 | NM_175972.3 NM_205908 NM_205908.2 NP_787986.1 NP_995630 NP_995630.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| Rtnl1-RB | FBtr0079039 | 1539 | 234aa | FBpp0078675 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTP4 | NM_001169405.2 NM_001169406.2 NM_175970 NM_175970.3 NM_175971.3 NP_001162876.1 NP_001162877.1 NP_787984 NP_787984.1 NP_787985.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rtnl1-RE | FBtr0079040 | 1511 | 234aa | FBpp0078676 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTP4 | NM_001169405.2 NM_001169406.2 NM_175970.3 NM_175971 NM_175971.3 NP_001162876.1 NP_001162877.1 NP_787984.1 NP_787985 NP_787985.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rtnl1-RI | FBtr0301539 | 1495 | 234aa | FBpp0290754 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KTP4 | NM_001169405 NM_001169405.2 NM_001169406.2 NM_175970.3 NM_175971.3 NP_001162876 NP_001162876.1 NP_001162877.1 NP_787984.1 NP_787985.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Rtnl1-RL | FBtr0332413 | 1475 | 222aa | FBpp0304686 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JHT9 | NM_001169407 NM_001169407.2 NP_001162878 NP_001162878.2 | - |
| Rtnl1-RA | FBtr0079042 | 1428 | 222aa | FBpp0078678 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VMW4 | NM_175973 NM_175973.3 NP_787987 NP_787987.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| Rtnl1-RC | FBtr0079043 | 1267 | 202aa | FBpp0078679 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VMW2 | NM_175974 NM_175974.3 NP_787988 NP_787988.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| Rtnl1-RD | FBtr0079041 | 1000 | 224aa | FBpp0078677 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VMW1 | NM_175972 NM_175972.3 NM_205908.2 NP_787986 NP_787986.1 NP_995630.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
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