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DB built by FlyBase

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Gene: Rtnl1 FBgn0053113

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Description

Reticulon-like1

Gene Synonyms

Location

Primary_assembly 2L: 4,992,808-5,009,720 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 11 transcripts (splice variants), 125 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Rtnl1-RH	FBtr0301538	2231	607aa	FBpp0290753	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHT6 Q6NP20	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Rtnl1-RF	FBtr0079038	2700	595aa	FBpp0078674	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMV9	-	-
Rtnl1-RJ	FBtr0301540	2311	234aa	FBpp0290755	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTP4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Rtnl1-RG	FBtr0079044	2271	224aa	FBpp0078680	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C6TP45 Q9VMW1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Rtnl1-RB	FBtr0079039	1539	234aa	FBpp0078675	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTP4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Rtnl1-RE	FBtr0079040	1511	234aa	FBpp0078676	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTP4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Rtnl1-RI	FBtr0301539	1495	234aa	FBpp0290754	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTP4	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Rtnl1-RL	FBtr0332413	1475	222aa	FBpp0304686	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHT9	-	-
Rtnl1-RA	FBtr0079042	1428	222aa	FBpp0078678	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMW4	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Rtnl1-RC	FBtr0079043	1267	202aa	FBpp0078679	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMW2	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Rtnl1-RD	FBtr0079041	1000	224aa	FBpp0078677	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VMW1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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