Rab3 interacting molecule
Primary_assembly 3R: 17,872,748-17,916,578 reverse strand.
BDGP6.46:AE014297.3
This gene has 14 transcripts (splice variants) and 82 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Rim-RK | FBtr0305021 | 11676 | 2798aa | FBpp0293558 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6M2 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| Rim-RF | FBtr0305016 | 11128 | 2798aa | FBpp0293553 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6M2 V5M054 V5M2P5 | - | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| Rim-RU | FBtr0336717 | 10892 | 1955aa | FBpp0307698 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7E1 V5M054 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RP | FBtr0308498 | 10557 | 2792aa | FBpp0300750 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6B1 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RW | FBtr0336719 | 10519 | 2595aa | FBpp0307700 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K742 Q95T36 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RR | FBtr0336714 | 10187 | 1941aa | FBpp0307695 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7E7 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RV | FBtr0336718 | 8629 | 1965aa | FBpp0307699 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K679 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RX | FBtr0336720 | 8599 | 1955aa | FBpp0307701 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7E1 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RQ | FBtr0336713 | 7864 | 1931aa | FBpp0307694 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VEE5 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RZ | FBtr0336722 | 7699 | 1655aa | FBpp0307703 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6B7 V5M054 V5M2P5 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RT | FBtr0336716 | 6964 | 1631aa | FBpp0307697 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6L8 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RY | FBtr0336721 | 6934 | 1621aa | FBpp0307702 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K677 V5M2P5 | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Rim-RS | FBtr0336715 | 6268 | 1399aa | FBpp0307696 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7F3 | - | - |
| Rim-RAA | FBtr0336723 | 6145 | 1358aa | FBpp0307704 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KG75 D5SHM8 V5M054 V5M2P5 | - | - |
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