Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- Orthologues
Ontologies
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
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DB built by FlyBase

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Gene: loj FBgn0061492

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Description

logjam

Gene Synonyms

Location

Primary_assembly 3L: 6,094,987-6,096,517 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 131 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
loj-RD	FBtr0301446	1179	237aa	FBpp0290661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRU2	NM_139770.4 NM_168154 NM_168154.3 NM_168155.3 NP_648027.3 NP_729140 NP_729140.2 NP_729141.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
loj-RF	FBtr0301448	1104	237aa	FBpp0290663	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRU2	NM_139770.4 NM_168154.3 NM_168155 NM_168155.3 NP_648027.3 NP_729140.2 NP_729141 NP_729141.2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
loj-RE	FBtr0301447	1084	237aa	FBpp0290662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRU2	NM_139770 NM_139770.4 NM_168154.3 NM_168155.3 NP_648027 NP_648027.3 NP_729140.2 NP_729141.2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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