tropomodulin
Primary_assembly 3R: 30,532,607-30,578,905 forward strand.
BDGP6.32:AE014297.3
This gene has 18 transcripts (splice variants) and 134 orthologues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| tmod-RN | FBtr0306686 | 2699 | 567aa | FBpp0297625 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6N4 Q6IIZ8 | NM_001260443 NM_001260443.2 NP_001247372 NP_001247372.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| tmod-RP | FBtr0336446 | 4701 | 438aa | FBpp0307552 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHF2 | NM_001276182 NM_001276182.1 NP_001263111 NP_001263111.1 | - |
| tmod-RO | FBtr0306687 | 3484 | 424aa | FBpp0297626 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAH8 | NM_001202390.1 NM_001260444 NM_001260444.2 NP_001189319.1 NP_001247373 NP_001247373.1 | - |
| tmod-RK | FBtr0302600 | 3232 | 424aa | FBpp0291756 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAH8 | NM_001202390 NM_001202390.1 NM_001260444.2 NP_001189319 NP_001189319.1 NP_001247373.1 | - |
| tmod-RG | FBtr0113483 | 3192 | 526aa | FBpp0112393 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JRH3 Q6IDG5 | NM_001104512 NM_001104512.4 NP_001097982 NP_001097982.1 | - |
| tmod-RQ | FBtr0336447 | 3182 | 454aa | FBpp0307553 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHW6 | NM_001276183 NM_001276183.1 NP_001263112 NP_001263112.1 | - |
| tmod-RI | FBtr0302111 | 3000 | 439aa | FBpp0291321 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | NM_001170305 NM_001170305.3 NM_001202391.2 NM_170503.4 NM_170504.4 NM_170505.4 NP_001163776 NP_001163776.1 NP_001189320.1 NP_733382.1 NP_733383.1 NP_733384.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RD | FBtr0085659 | 2906 | 439aa | FBpp0085021 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | NM_001170305.3 NM_001202391.2 NM_170503 NM_170503.4 NM_170504.4 NM_170505.4 NP_001163776.1 NP_001189320.1 NP_733382 NP_733382.1 NP_733383.1 NP_733384.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RF | FBtr0085660 | 2770 | 439aa | FBpp0085022 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | NM_001170305.3 NM_001202391.2 NM_170503.4 NM_170504.4 NM_170505 NM_170505.4 NP_001163776.1 NP_001189320.1 NP_733382.1 NP_733383.1 NP_733384 NP_733384.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RJ | FBtr0302112 | 2753 | 409aa | FBpp0291322 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA58 | NM_001170306 NM_001170306.2 NM_170506.3 NP_001163777 NP_001163777.1 NP_733385.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RH | FBtr0302110 | 2717 | 372aa | FBpp0291320 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ21 | NM_001170304 NM_001170304.3 NP_001163775 NP_001163775.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RC | FBtr0085661 | 2716 | 409aa | FBpp0085023 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA58 | NM_001170306.2 NM_170506 NM_170506.3 NP_001163777.1 NP_733385 NP_733385.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RE | FBtr0085658 | 2685 | 439aa | FBpp0085020 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C8VV00 Q9VA59 | NM_001170305.3 NM_001202391.2 NM_170503.4 NM_170504 NM_170504.4 NM_170505.4 NP_001163776.1 NP_001189320.1 NP_733382.1 NP_733383 NP_733383.1 NP_733384.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RL | FBtr0302601 | 2662 | 439aa | FBpp0291757 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | NM_001170305.3 NM_001202391 NM_001202391.2 NM_170503.4 NM_170504.4 NM_170505.4 NP_001163776.1 NP_001189320 NP_001189320.1 NP_733382.1 NP_733383.1 NP_733384.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RR | FBtr0479778 | 2614 | 526aa | FBpp0428111 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6H2EEH6 | - | - |
| tmod-RA | FBtr0085662 | 2537 | 367aa | FBpp0085024 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C6TP61 O46231 | NM_057683 NM_057683.5 NP_477031 NP_477031.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| tmod-RB | FBtr0085663 | 2508 | 403aa | FBpp0085025 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA56 | NM_057684 NM_057684.4 NP_477032 NP_477032.1 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| tmod-RM | FBtr0306685 | 2299 | 449aa | FBpp0297624 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7R6 | NM_001260442 NM_001260442.2 NP_001247371 NP_001247371.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
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