Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: vvl FBgn0086680

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Description

ventral veins lacking

Gene Synonyms

Location

Primary_assembly 3L: 6,790,158-6,794,941 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 186 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vvl-RF	FBtr0346999	4380	742aa	FBpp0312431	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WGV5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
vvl-RD	FBtr0345911	4784	427aa	FBpp0311831	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E6G8 P16241	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vvl-RC	FBtr0330059	4380	713aa	FBpp0303092	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI48	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vvl-RE	FBtr0346998	4380	726aa	FBpp0312430	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WNN1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vvl-RA	FBtr0076944	4380	427aa	FBpp0076653	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E6G8 P16241	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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